get_annotation_triples

get_annotation_triples

get_annotation_triples(compendium = "vespucci", ids = NULL)

Arguments

compendium	A string - the selected compendium
ids	A string - unique id of a biofeature, a sample, etc.

Value

A matrix

Examples

get_annotation_triples(ids = "U2FtcGxlVHlwZTozMjAw")
#>       [,1]                               
#>  [1,] "NCBITaxon_29760"                  
#>  [2,] "GSM2627902.ch1"                   
#>  [3,] "GSM2627902.ch1"                   
#>  [4,] "GSM2627902.ch1"                   
#>  [5,] "Na05acd2da1c646f59f1d54b1c2baf3b9"
#>  [6,] "UO_0000036"                       
#>  [7,] "Na05acd2da1c646f59f1d54b1c2baf3b9"
#>  [8,] "PO_0009084"                       
#>  [9,] "GSM2627902.ch1"                   
#> [10,] "GSM2627902.ch1"                   
#> [11,] "ENVO_00000116"                    
#> [12,] "Nb376a2e3e9684a0ca1b3d1a63b66ce9e"
#> [13,] "Nb376a2e3e9684a0ca1b3d1a63b66ce9e"
#> [14,] "N94587723834d4f339030e25c97509dca"
#> [15,] "N94587723834d4f339030e25c97509dca"
#> [16,] "N94587723834d4f339030e25c97509dca"
#> [17,] "N917495b5ed284a0480ca94d9a8f89d36"
#> [18,] "N611a83bb3e9c46389dd27a1111f09fb7"
#> [19,] "UO_0000185"                       
#> [20,] "N611a83bb3e9c46389dd27a1111f09fb7"
#> [21,] "UO_0000185"                       
#> [22,] "N917495b5ed284a0480ca94d9a8f89d36"
#> [23,] "GSM2627902.ch1"                   
#> [24,] "N769ea136fcfa4655a640c6ecb1213d73"
#> [25,] "UO_0000033"                       
#> [26,] "N769ea136fcfa4655a640c6ecb1213d73"
#> [27,] "Nf3b8abbd5e114604bfb2faa53fc29768"
#> [28,] "Nf3b8abbd5e114604bfb2faa53fc29768"
#>       [,2]                                                                                                                                                                                                                                                      
#>  [1,] "name"                                                                                                                                                                                                                                                    
#>  [2,] "Genotype"                                                                                                                                                                                                                                                
#>  [3,] "cultivar"                                                                                                                                                                                                                                                
#>  [4,] "Year of Onset"                                                                                                                                                                                                                                           
#>  [5,] "value"                                                                                                                                                                                                                                                   
#>  [6,] "name"                                                                                                                                                                                                                                                    
#>  [7,] "unit"                                                                                                                                                                                                                                                    
#>  [8,] "name"                                                                                                                                                                                                                                                    
#>  [9,] "type"                                                                                                                                                                                                                                                    
#> [10,] "is grown in"                                                                                                                                                                                                                                             
#> [11,] "name"                                                                                                                                                                                                                                                    
#> [12,] "type"                                                                                                                                                                                                                                                    
#> [13,] "[{'@id': 'http://purl.obolibrary.org/obo/gaz.owl#GAZ_00000448', 'http://www.w3.org/2002/07/owl#id': [{'@value': 'GAZ_00000448'}], 'label': [{'@value': 'Geographical Location'}], 'http://www.w3.org/2002/07/owl#hasOBONamespace': [{'@value': 'GAZ'}]}]"
#> [14,] "Description"                                                                                                                                                                                                                                             
#> [15,] "Latitude"                                                                                                                                                                                                                                                
#> [16,] "Longitude"                                                                                                                                                                                                                                               
#> [17,] "value"                                                                                                                                                                                                                                                   
#> [18,] "value"                                                                                                                                                                                                                                                   
#> [19,] "name"                                                                                                                                                                                                                                                    
#> [20,] "unit"                                                                                                                                                                                                                                                    
#> [21,] "name"                                                                                                                                                                                                                                                    
#> [22,] "unit"                                                                                                                                                                                                                                                    
#> [23,] "whole plant development stage"                                                                                                                                                                                                                           
#> [24,] "value"                                                                                                                                                                                                                                                   
#> [25,] "name"                                                                                                                                                                                                                                                    
#> [26,] "unit"                                                                                                                                                                                                                                                    
#> [27,] "Begin"                                                                                                                                                                                                                                                   
#> [28,] "Add"                                                                                                                                                                                                                                                     
#>       [,3]                               
#>  [1,] "Vitis vinifera"                   
#>  [2,] "NCBITaxon_29760"                  
#>  [3,] "Pinot Noir"                       
#>  [4,] "Na05acd2da1c646f59f1d54b1c2baf3b9"
#>  [5,] "2014"                             
#>  [6,] "year"                             
#>  [7,] "UO_0000036"                       
#>  [8,] "pericarp"                         
#>  [9,] "PO_0009084"                       
#> [10,] "Nb376a2e3e9684a0ca1b3d1a63b66ce9e"
#> [11,] "vineyard"                         
#> [12,] "ENVO_00000116"                    
#> [13,] "N94587723834d4f339030e25c97509dca"
#> [14,] "Modesto California USA"           
#> [15,] "N917495b5ed284a0480ca94d9a8f89d36"
#> [16,] "N611a83bb3e9c46389dd27a1111f09fb7"
#> [17,] "37.63858"                         
#> [18,] "-120.99346"                       
#> [19,] "degree"                           
#> [20,] "UO_0000185"                       
#> [21,] "degree"                           
#> [22,] "UO_0000185"                       
#> [23,] "Nf3b8abbd5e114604bfb2faa53fc29768"
#> [24,] "14.0"                             
#> [25,] "day"                              
#> [26,] "UO_0000033"                       
#> [27,] "E-L_35"                           
#> [28,] "N769ea136fcfa4655a640c6ecb1213d73"