get_biofeature_by_name
get_biofeature_by_name( compendium = "vespucci", name_In = NULL, field = "sequence" )
| compendium | A string - the selected compendium |
|---|---|
| name_In | A string - the biofeature (gene_name) |
| field | biofeature field of interest ('sequence' as default) |
A data.frame with three columns: name,id and value
#> name id #> 1 VIT_00s0332g00060 QmlvRmVhdHVyZVZhbHVlVHlwZToyNzQzOQ== #> 2 VIT_00s0246g00220 QmlvRmVhdHVyZVZhbHVlVHlwZToyNzg5Mg== #> 3 VIT_00s0332g00160 QmlvRmVhdHVyZVZhbHVlVHlwZToyNzkwMA== #> value #> 1 ATGCCTCAACTGGATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCCTCTTTACTTTCTATATTCCCATATGCAATGATGGAGATGGAGTACTTGGGATCAGCAGAATTCTAAAACTACGGAACCAACTGGTTTCACACCGGGGGAACAACATCCGGAGCAACGACCCCAACAGTTTGGAAGATATCTTGAGAAAAGGTTTTAGCACCGGTGTATCCTATATGTACTCTAGTTTATTCGAAGTATCCCAATGGTGTAACGTCGTCGACTTATTGGGAAAAAGGAGTCAAATAACATTGATCTCTTGTTTCGGAGAAATAAGTGGCTCACGAGGAATGGAAAGAAACATATTCTATTTGATCTCGAAGTCCTCATATAGCACTTCTTCCAATCCTGGATGGGGGATCACTTGTAGGAATGACATAATGCTAATCCATGTTCCACACGGCCAAGGAAACATCGTTTTTTAATCTCATTATGACCGGAAGAAATTCTTTCTCGATCAGAAAAGTGGAATGGAAGGCACTACAAGCAAGAAAGATATACTCCTTTTCAAATCGCCCCGCGAAGACGGACGTTCAGAAAGGTTCTCGAGATTCTCAATCGCTCTAGTGGGGAGGGATAGTGCTTGAAGGGAGCGAGACCAAGCCGAGCCACTAGGAGAGTAAGCCCTTCCCACGTGTCAAGTTGAATAAATGAATGCAGCCTCAACCAGAGAGATCAACCAGCGCCTTTTATTTTAGGCCGTCGGCGGTGCAGAACGCACTAATCCGCGACCAACAAGTTTTCCGAAACCGAACTGAATGGAATTCTTACTTTAAAAAAATGCTTGCTGAAAATCAAAGAAAGAAGGTCCATTTTCCCACGTAGTTCGTCGGTCAAACCAACGATTCTCAAAGTAATAGAGAGATCTTTTTCTAGTTAGACTTCTATCAATGCAATGAAAGAACCATCCCTTCCTATTTGTTTGTCCTGTCAGATATAAAGAAAATTAGACCCCAAAGAGCCCTTCTTTACCACTTTAGGGGGTGGGGGTGAAGGGGGGGTTTACATACAACCAAGGCAAAGTGGTTTATGATTGAATCTCAGAGGCATTCTTTTCATTTGGTAGATCCAAGTCCATGGCCTATTTCGGGTTCACTCGGAGCTTTGGCAACCACCGTAGAGGTGTGATGTACATGCACCCATTTCAAGGGGGTGCAACACTTCTCAGTTTGGCATCATATTTATCCTATATACCATGTTCGTATGCTGGCGCGATGTTATACGTGAATCAACGTTGGGAGGACATCATACCAAAGTCGTACA #> 2 ACTAAAAATTTAGCTCATTGAATAAGTAAACAATTGAATTGGATTCGGTTGGATGGTACCAACGAAATCGAGTGCTAACTCCCATTTCTTATTGAATTAACCGATCAACTTTCTATCGAACTTTTGGATTCGATAATTTTCGCAAAAAATTTCGTTTAATTTGACTTTATTATTATTATTATGAGAATAAATCCTACTACTTCTGGTCCTAGGGTTTCCACGCTTGAAAAAAAAAACCTGGGGCGTATCGCTCAAATCATTGGTCCGATCCTGGATGTAGCTTTTCCCCCGGGCAAGATGCCTAATATTTACAATGCGCTGGTAGTTAAGGGTCGAGATACTGTCGGTCAACAAATTAATGTGACTTGTGAGGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTGGCTATGAGTGCTACAGATGGTCTAATGAGAGGAATGGAAGTGATTGACACGGGAGCTCCTCTAAGTGTTCCAGTCGGTGGAGCGACTCTCGGACGAATTTTCAATGTGCTTGGAGAGCTTGTTGATAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATAGATCTGCGCCCGCATTTATACAGTTAGATACAAAATTCTCTATTTTTGAAACAGGAATTCAAGTTGTAGATCTTTTAGCCCCTTATCGCCTTGGAGGAAAAATCGAACTACTCGGGTTGGCTGGTTGGAAGGATTGCTTTCTGCCGTCTCTCGTTCTTGACAGATCCGATCGGGTGTTCATAATCTGGAGTAAAAGGATTCGAACCTTTGCATGCCGGTACCAAAAACCGATGCCTTACCACTTGGCTATACTCCATACGGCCTTAGGCCTTTTGATAACTAATTAGAGTTGACATGAAATGGGTCACGAAAGAAGACGTATCCGATGAATGAATGATTCATTCCCCTCCCACTCACACGGGTTCTTCTATTGAAGAGGTTCCCCTTCTTCTATGTGAGGTGGGGCGTACGTAAGAGCGGAACCTAGATAGAACGCGGAGCGCCGGCCCCGGCCGCCGATACAGTTACCATGCTTACCAGCTCTTACCATTGCCGCCTATATATATAGATGGGAGGTAGGCGAGGGTAGCTTGCTTCTCTTCTCCTAGGCTACCTGCACATGTTATTCGCGAAGAAAAGGCAGCGAGCGGTTCTTCGCTTAGTAGACGGCCGCCGGACGACGACCGCTTCTTGTTCTCGCCCAGCCGCTTCTTTTTTTTTCTTATTATTTAGAATCCTAAACTAAAGAAAGAAGCTCCTGAATCAACGCAGGGTGGTCGTAGATCAGCAGGAGAACTGTACTAACCTGCCGCCGGTGACTTTATCATATCAGGGCTCCGCAGGAGAAGAAAGAAGGTCCGGGTCCAATTTATAATGAAGCGAAGGTCCCCCTTACTCCCTATTCTCTCTTAAAGCTTTATAAAGCTCGGCGAGAAAGGGTTGGTTAAGAACTATTGACTGTAAACCATAGCAGTTACAGTCACTCAATGGAGATGTTCGCCTTTGGAATGAAGATGGATGAGCAGGCACTTGAGCCTGGAACTGATTTAATTCGGGGAAAACATGGAACCGGTTACTATACTGGGGGAGGCGAGACATGACCGCGACTTAAGATTCAAGTACCGTTGAAAAGACTAAAGAAACGGGGGGA #> 3 CGGAATGATCGGTCGGACAGAGGCTAGGGCTGCTCCTTCCCACCGGCGTCCTTCTTGTGTGTCGGAGATATAAAGCGAGTGCACGGAAAGAACGGGAACTGGGTCGATCTATTCTATGGCGAAGCATCCGAAGCATAACTGCACACTCACACGATCTTTGCCGAGAGATAGGAGCATTCGGTGGAACCGGTGAACTACACTTGCTTCTGGATAGATGTGTGGGACAGAGGGCTCGTGGTACCTGCTGCCCACCCTTCCCCCTCTGCTTTGAGAACCGTGTGAACGGAGAGTGGGCAGAAGGGAAGGAGGTCCTCATACGGAGTCGCACACTTACTTGAGCAGTGCGGGAGACTGGGGAATGGGTCGAGTAAACTCCCCTGGGGCCGAAAAAATAACAGACGAAGCTTGACTTAGATAGGGCTTTGATTTGATTGGTATTGATTTTTTCTTAGTGATTGGAAAGAAGGGCGCATGGGTTATAGAAAGGGAAGGCGGAGGTAGTACTTCGAATGGCGAAGAGAGGCGGCTCGGCAGGGAAGGAATGGGAAATCGTCAAGGATGACTTCTTTGTTGGCGAAACGAAGGGCTAAATAGCGCCAGTGATTCTCTGAGCCGGTCTGGATTTCCAACGCCTCGGGAAACTGGTCGAGATAGATGACAGCACCTTTTTCCTCTCTTCCTTACCGGGAGGGCAATCTTATCTTATGGCCTTCACCTCCAGCCCGGCCCAGAAATAGAACCCAGCCCCTTTTTGATCCATTCATTTCTGCAAGCAGGGAGGATCCAGAGCTAAGCCCCCCTCCTATTCGAGGTCGGGTGGCCTCGCCCCACAAGCACCTAACCTTCCTTTTGCTCTTCCTTCGGTTTGCCTCCACGAACGCGCCACCTAGGAGCCCTACTCATATTCCAAAGGCGCTACTTCAATTCAAGCGCAAGCCCCCCTTCTATTGCATAACCTAAAAAAGTGTTAAGCAAAGTACCAAAGTGGTTGCGGGAACGATACGCTTTGGTTACCGGCGAACGCTTCCAAATCTCGAGTTTCCGGCTGTTTCCTAAATTGAAGTAGCCTTTCGTCGCCCTACCAAATGAAAGAAGTCACTATCAAACAGCTCGCCCTACTGAAGTACCAAAGGTGCGCTCCGCCCGGTGACTAAGAAATAAATTGGTTTGCGCTTTCATTGAAGTGATGAGGGTGATCTACGATCAGGCTGGTCGGAACGATCAGGGGGAAGTAGGGCTCCTATTGAAACGCTTTCTCTCCCTCAAAAGGCGACCAGCTTTCAATACTAAGCCGTGTTATGGTTTCGTTGTTCGTTCCGTCGTCGACCCTATCTATGTTTCTACGATGGCCCAAGAGCACGCTCATTCTTCAGCCGTAGAGAGACTTTTGAATTGCGAGGTACCATTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCGAATTTCAAATCATTCACTTGCTTTAACTACTCATGCTATGGATGTGGGAGCATCAACTCCGTCCCTGTGGGCTTCTGAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAGAGTCTCGAGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTCGAGATATTGATTCCTCCACACAACAATTTGCTTCTCGTATCGACGGATTAGAAGAGATGTCAACCGGCAACCGTATCTGGAAACAACGATTAGTGGATATTGGTACTGTCACTGCACAGCAAGCAAAGGATTGGGGATTCAGTGGTGTAATGTTAAGAGGTCGTGTACCAGAGTGGATCGCTATGATCGTTACTGTATCCGTATCGAAGATGATGCGACAAAGTGTTCGAATCATTGTGCAATGTCCTAATCAAATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATGTCGAATGAAACTATCCATGGAATCACTCAGGTTAAGCTCCCATTGGGAACCCCAATTTCTTTCTTCGGAGCCGTTTCTTTTCCCGTCCCCCCGCCCCGGCATAGCGCTTCGCTTCCGGTTCTTCGGAAGAATCAACTGA