retrieve internal id, name (GSM), description for sample providing sampleName (GSM)

retrieve internal id, name (GSM), description for sample providing sampleName (GSM)

get_sample_by_gsm(
  compendium = "vespucci",
  normalization = "limma",
  sampleName_In = "GSM1313535"
)

Arguments

compendium	A string - the selected compendium
normalization	A string - 'tpm' (as default), 'limma' or 'legacy'
sampleName_In	A character5 vector - GSMs (GEO Sample access ids)

Value

A data.frame with three columns: sampleId, sampleName, sampleDescription

Examples

if (FALSE) {
get_sample_by_gsm(sampleName_In="GSM147672.ch1")
}