retrieve internal id, name (GSM), description from all samples with experiment id (GSE)

retrieve internal id, name (GSM), description from all samples with experiment id (GSE)

get_samples_by_gse(
  compendium = "vespucci",
  normalization = "tpm",
  experimentAccessId = NULL
)

Arguments

compendium	A string - the selected compendium
normalization	A string - 'tpm' (as default), 'limma' or 'legacy'
experimentAccessId	A string - GSE (GEO Series (experiment) access id)

Value

A data.frame with three columns: sampleId, sampleName, sampleDescription

Examples

if (FALSE) {
get_samples_by_gse(experimentAccessId = "GSE98923", normalization = "legacy")
}