get_sampleset_id

Source: R/queries.R

get_sampleset_id

get_sampleset_id(
  compendium = "vespucci",
  normalization = "limma",
  id_In = NULL,
  useIds = FALSE
)

Arguments

compendium

A string - the selected compendium
normalization

A string - either 'limma' (default),'tpm' or legacy as normalization
id_In

A vector of character strings - either samplesetNames or sampleSetIds
useIds

A logical (FALSE as default) - It allows using sampleSetIds

Value

A data.frame with two columns: id and name

Examples

if (FALSE) {
my_ss=c("GSE75498_OS_T0-13-vs-GSE75498_C_T0-21","harvest_4","harvest_5")
get_sampleset_id(id_In = my_ss, normalization = "limma", useIds = FALSE)
my_ids=c("U2FtcGxlU2V0VHlwZTo2NDE5","U2FtcGxlU2V0VHlwZToyMTg2OA==","U2FtcGxlU2V0VHlwZToyMTg2Nw==")
get_sampleset_id(id_In = my_ids, normalization = "limma", useIds = TRUE)
}