get_samplesets_ranking

Source: R/queries.R

get_samplesets_ranking

get_samplesets_ranking(
  compendium = "vespucci",
  normalization = "legacy",
  rankTarget = "samplesets",
  rank = "magnitude",
  biofeaturesNames = NULL,
  top_n = 50,
  useIds = FALSE
)

Arguments

compendium

A string - the selected compendium
normalization

A string ('legacy' as default)
rankTarget

A string ('sampleset' as default)
rank

A string ('magnitude' as default)
biofeaturesNames

A vector of character strings (here gene_names)
top_n

A numeric - an integer for selecting the top ranked samplesets
useIds

A logical - TRUE as default

Value

A data.frame with three columns id, name, value

Examples

if (FALSE) {
get_samplesets_ranking(biofeaturesNames=c("QmlvRmVhdHVyZVR5cGU6MQ==",
"QmlvRmVhdHVyZVR5cGU6Mg==","QmlvRmVhdHVyZVR5cGU6Mw==","QmlvRmVhdHVyZVR5cGU6NA==",
 "QmlvRmVhdHVyZVR5cGU6NQ=="), useIds = TRUE, top_n = 10)
 }